enriched_sequencing_run¶
Info¶
Data contract for the Sequencing Run table of the dna domain of the Biocloud. - name: Sequencing Run - version: 0.0.1 - status: active
Terms of Use¶
Purpose¶
Data contract for the Sequencing Run table of the dna domain of the Biocloud.
Servers¶
| Name | Type | Attributes |
|---|---|---|
| production | databricks | No description. • environment: production • roles: [{'role': 'Admins', 'description': 'Access to all the data and settings'}] • catalog: dna_production • host: dbc-2030845a-6c3b.cloud.databricks.com • schema_: enriched |
| development | databricks | No description. • environment: development • roles: [{'role': 'Admins', 'description': 'Access to all the data and settings'}] • catalog: dna_development • host: dbc-03ed8bbb-c0ec.cloud.databricks.com • schema_: enriched |
Schema¶
sequencing_run¶
The sequencing run table contains information about sequencing runs. A sequencing run is a laboratory process where amplicons are sequenced to generate consensus sequences. This table must be processed before the amplicon table.
| Field | Type | Attributes |
|---|---|---|
| sequencing_run_id | bigint | Biocloud generated identifier for the sequencing run. • primaryKey• primaryKeyPosition: 1 • required |
| title | string | Name of the sample or pool input by the user in MinKNOW before running the sequencing. • examples: ['Sample_Pool_01', 'Run_2024_001'] |
| project_name | string | Name of the project or experiment associated with this sequencing run. • examples: ['ARISE_Project', 'Biodiversity_Survey_2024'] |
| end_date_time | timestamp | Timestamp when the sequencing run was completed. |
| source_id | string | The ID of this record in the source system. This can be used to track the origin of the data. • required |
| source | string | The name of the source system used to create this record in the table. • required |
| inserted_ts_utc | timestamp | UTC timestamp when record was inserted. |
| updated_ts_utc | timestamp | UTC timestamp when record was last updated. |