raw_amplicons¶
Info¶
Data contract for ingesting Nanopore amplicons data from the landing zone into raw. - name: Amplicons - version: 0.0.5 - status: active
Terms of Use¶
Purpose¶
Data contract for ingesting Nanopore amplicons data from the landing zone into raw.
Servers¶
| Name | Type | Attributes |
|---|---|---|
| production | databricks | No description. • environment: production • roles: [{'role': 'Admins', 'description': 'Access to all the data and settings'}] • catalog: raw_production • host: dbc-2030845a-6c3b.cloud.databricks.com • schema_: nanopore |
| development | databricks | No description. • environment: development • roles: [{'role': 'Admins', 'description': 'Access to all the data and settings'}] • catalog: raw_development • host: dbc-03ed8bbb-c0ec.cloud.databricks.com • schema_: nanopore |
Schema¶
amplicons¶
Table storing the amplicons validated data from Nanopore in the raw layer of the Biocloud.
| Field | Type | Attributes |
|---|---|---|
| consensuses_url | string | URL to consensus sequence data |
| created_at | string | Timestamp when record was created |
| extract_id | string | Identifier of the DNA extract |
| forward_primer | string | Sequence of the forward primer • required |
| id | string | Unique identifier of the record • primaryKey• primaryKeyPosition: 1 • required |
| is_control | boolean | Indicates if sample is a control |
| label | string | Descriptive label for the sample |
| marker | string | Genetic marker used for sequencing • required |
| marker_max_length | bigint | Maximum expected marker length |
| marker_min_length | bigint | Minimum expected marker length |
| modified_at | string | Timestamp when record was last modified |
| name | string | Name assigned to the sample |
| native_barcode_id | string | Identifier of the native barcode |
| native_barcode_kit | string | Kit used for native barcoding |
| pcr_barcode_id | string | Identifier of the PCR barcode |
| pcr_barcode_kit | string | Kit used for PCR barcoding |
| pcr_id | string | Identifier of the PCR reaction • required |
| pcr_plate_position | string | Position on the PCR plate |
| project_id | string | Identifier of the associated project • required |
| reverse_primer | string | Sequence of the reverse primer • required |
| sample_plate_id | string | Identifier of the sample plate used |
| sequencing_run | string | Identifier of the associated sequencing run • required |
| stock_plate_id | string | Identifier of the stock plate source |
| taxon | string | Taxonomic name or identifier of the organism |
| translation_table | string | Genetic code table used for translation |
| url | string | URL linking to the sample or record data |
| inserted_ts_utc | timestamp | UTC timestamp when record was inserted |
| updated_ts_utc | timestamp | UTC timestamp when record was last updated |