raw_sequencing_runs¶
Info¶
Data contract for ingesting Nanopore sequencing runs data from the landing zone into raw. - name: Sequencing_runs - version: 0.0.5 - status: active
Terms of Use¶
Purpose¶
Data contract for ingesting Nanopore sequencing runs data from the landing zone into raw.
Servers¶
| Name | Type | Attributes |
|---|---|---|
| production | databricks | No description. • environment: production • roles: [{'role': 'Admins', 'description': 'Access to all the data and settings'}] • catalog: raw_production • host: dbc-2030845a-6c3b.cloud.databricks.com • schema_: nanopore |
| development | databricks | No description. • environment: development • roles: [{'role': 'Admins', 'description': 'Access to all the data and settings'}] • catalog: raw_development • host: dbc-03ed8bbb-c0ec.cloud.databricks.com • schema_: nanopore |
Schema¶
sequencing_runs¶
Table storing the sequencing runs validated data from Nanopore in the raw layer of the Biocloud.
| Field | Type | Attributes |
|---|---|---|
| amplicon_count | bigint | Number of amplicons processed in the run |
| amplicons_url | string | URL linking to amplicon data |
| created_at | string | Timestamp when record was created |
| end_time | string | Time when sequencing run ended • required |
| estimated_bases | bigint | Estimated total number of bases produced |
| experiment_name | string | Name of the sequencing experiment |
| flow_cell_id | string | Identifier of the flow cell used |
| flow_cell_type | string | Type or model of the flow cell |
| id | string | Unique identifier of the sequencing run • primaryKey• primaryKeyPosition: 1 • required |
| modified_at | string | Timestamp when record was last modified |
| plate_count | bigint | Number of plates used in the run |
| protocol_id | string | Identifier of the sequencing protocol |
| read_count | bigint | Total number of reads produced |
| run_duration | string | Duration of the sequencing run |
| sequencing_device | string | Device used for sequencing |
| sequencing_kit | string | Kit used for sequencing |
| short_id | string | Shortened identifier for display |
| start_time | string | Time when sequencing run started |
| title | string | Descriptive title of the sequencing run • required |
| title_alias | string | Alternative title or alias for the run |
| url | string | URL to access the sequence data |
| inserted_ts_utc | timestamp | UTC timestamp when inserted |
| updated_ts_utc | timestamp | UTC timestamp when last updated |